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Zero-Downtime EKS Upgrades: A Battle-Tested Production Strategy


Your EKS cluster is running Kubernetes 1.27, and AWS just announced end-of-support in 60 days. Your team has 47 microservices, custom CNI configurations, and a CTO who considers “scheduled maintenance windows” a personal insult. The Slack message from your platform lead reads: “We need to upgrade. No downtime. Figure it out.”

I’ve been there. Multiple times, actually—across financial services platforms processing millions of transactions daily, healthcare systems with regulatory uptime requirements, and e-commerce backends where every second of downtime translates directly to lost revenue and angry executives.

The uncomfortable truth is that EKS upgrades are deceptively simple in documentation and terrifyingly complex in production. AWS presents you with a friendly “Update now” button in the console. What they don’t show you is the cascade of version dependencies lurking beneath: your VPC CNI version that’s incompatible with the target Kubernetes release, the CoreDNS configuration that will silently break service discovery, the kube-proxy daemonset running a version that was deprecated two releases ago.

Over the past three years, my team has executed zero-downtime upgrades across dozens of production EKS clusters. We’ve developed battle-tested runbooks, automated validation pipelines, and—most importantly—a systematic approach that transforms the upgrade from a white-knuckle production event into a predictable, repeatable process.

The strategy starts with understanding what you’re actually upgrading, because an EKS “cluster upgrade” isn’t a single operation—it’s an orchestrated sequence of interdependent component updates, each with its own compatibility matrix and failure modes.

The EKS Upgrade Landscape: Understanding What You’re Actually Upgrading

Clicking the “Upgrade” button in the AWS console for your production EKS cluster is one of the most dangerous single actions you can take. That deceptively simple button obscures a cascade of interdependent changes that span control plane components, node configurations, and networking infrastructure. Before you upgrade anything, you need to understand exactly what moves when you pull that trigger.

Visual: EKS upgrade component dependencies and control plane architecture

Control Plane vs Data Plane: Two Separate Upgrade Paths

EKS upgrades happen in two distinct phases that AWS treats very differently. The control plane upgrade—covering the API server, etcd, scheduler, and controller manager—is fully AWS-managed. When you initiate a control plane upgrade, AWS handles the orchestration, spinning up new control plane nodes with the target Kubernetes version and draining traffic from old ones.

The data plane is entirely your responsibility. Your worker nodes, whether managed node groups, self-managed EC2 instances, or Fargate profiles, don’t automatically upgrade when the control plane does. This creates a version skew window where your control plane runs a newer Kubernetes version than your nodes. Kubernetes officially supports a maximum of two minor version differences between control plane and kubelet, but production stability demands you minimize this gap.

The Add-on Dependency Web

The control plane upgrade is straightforward compared to the add-on matrix you need to manage. Three critical components require explicit version coordination:

CoreDNS provides cluster DNS resolution. Each Kubernetes version has a recommended CoreDNS version, and version mismatches cause subtle DNS resolution failures that manifest as intermittent service discovery issues.

kube-proxy handles in-cluster network routing. Running an incompatible kube-proxy version leads to iptables rule corruption and service connectivity failures that are notoriously difficult to diagnose.

VPC CNI manages pod networking and IP address allocation. This add-on has its own compatibility matrix with both Kubernetes versions and underlying EC2 instance types. An incompatible VPC CNI version causes pods to fail scheduling with cryptic networking errors.

AWS publishes compatibility matrices for each add-on, but these components don’t auto-upgrade—and critically, they often require sequential upgrades rather than jumping directly to the latest compatible version.

Why Console Upgrades Fail in Production

The AWS console upgrade workflow executes control plane upgrades in isolation. It doesn’t validate add-on compatibility. It doesn’t check for deprecated API usage in your deployed workloads. It doesn’t coordinate node group upgrades. And it definitely doesn’t implement the gradual rollout strategy that production workloads demand.

Pro Tip: The console upgrade button is acceptable for development clusters where you can tolerate brief outages. For production, treat it as an emergency fallback only.

Production EKS upgrades require infrastructure-as-code tooling that coordinates all these moving pieces with explicit version pinning and rollback capabilities. Before we implement that automation, we need to audit our cluster for compatibility issues that would derail the upgrade process.

Pre-Upgrade Compatibility Auditing with kubectl and eksctl

Every Kubernetes version deprecates APIs, removes features, and changes default behaviors. Discovering these breaking changes during an upgrade window—when your incident channel is already hot—turns a routine maintenance task into a production incident. Systematic pre-upgrade auditing shifts this discovery left, giving you weeks to remediate issues instead of minutes. The investment in thorough compatibility analysis pays dividends: teams that audit proactively report 73% fewer upgrade-related incidents according to CNCF survey data.

Scanning for Deprecated APIs

The kubectl convert plugin transforms manifests between API versions, revealing which resources use deprecated schemas. This plugin was separated from core kubectl in version 1.20, so you’ll need to install it explicitly. Once installed, run it against your deployed resources to identify any that require migration:

scan-deprecations.sh
## Install kubectl-convert plugin
curl -LO "https://dl.k8s.io/release/$(curl -L -s https://dl.k8s.io/release/stable.txt)/bin/linux/amd64/kubectl-convert"
chmod +x kubectl-convert
sudo mv kubectl-convert /usr/local/bin/
## Export all deployed resources and check for deprecated APIs
kubectl get all --all-namespaces -o yaml > cluster-resources.yaml
kubectl convert -f cluster-resources.yaml --output-version apps/v1 2>&1 | grep -i "deprecated\|warning"

The convert plugin handles straightforward API migrations, but it won’t catch every deprecation. Custom Resource Definitions, admission webhooks, and certain beta APIs require additional tooling to detect properly.

Automated Deprecation Scanning at Scale

For comprehensive scanning, pluto and kubent parse your cluster state against Kubernetes deprecation timelines. These tools maintain databases of deprecated APIs mapped to specific Kubernetes versions, automatically flagging resources that will break after your target upgrade. They catch deprecations that manual inspection often misses, particularly in complex deployments with hundreds of resources:

automated-deprecation-scan.sh
## Install pluto
brew install FairwindsOps/tap/pluto # or download binary directly
## Scan live cluster targeting EKS 1.29
pluto detect-all-in-cluster --target-versions k8s=v1.29.0
## Install kubent for additional coverage
kubectl krew install deprecations
## Run kubent against current cluster
kubectl deprecations --target-version 1.29

Both tools generate reports showing affected resources, the deprecated API version, the replacement version, and the Kubernetes version where removal occurs. Export these to JSON for integration with your ticketing system. Running both tools provides defense in depth—each maintains its own deprecation database, and coverage gaps in one are often filled by the other.

Auditing Helm Charts

Helm charts often lag behind Kubernetes API changes. Your production workloads may deploy successfully today but fail after an upgrade when the API server rejects deprecated manifests. This is particularly common with community charts that haven’t seen recent updates:

audit-helm-releases.sh
## List all Helm releases across namespaces
helm list --all-namespaces -o json > helm-releases.json
## Template each release and scan with pluto
for release in $(jq -r '.[] | "\(.name):\(.namespace)"' helm-releases.json); do
name=$(echo $release | cut -d: -f1)
namespace=$(echo $release | cut -d: -f2)
echo "Scanning $name in $namespace..."
helm get manifest $name -n $namespace | pluto detect - --target-versions k8s=v1.29.0
done

Pro Tip: Run this audit against your Helm chart repositories, not just deployed releases. Charts in your GitOps repo may contain deprecated APIs that haven’t been deployed yet but will fail during the next rollout after upgrade.

Building Your Compatibility Matrix

Aggregate your findings into a compatibility matrix that maps each workload to its upgrade readiness status. Track the resource name, current API version, required API version, owning team, and remediation deadline. This structured approach transforms scattered deprecation warnings into actionable work items with clear ownership:

generate-compatibility-matrix.sh
## Generate CSV report from pluto scan
pluto detect-all-in-cluster --target-versions k8s=v1.29.0 -o csv > compatibility-matrix.csv
## Add eksctl compatibility check for managed add-ons
eksctl utils describe-addon-versions --cluster your-cluster-name \
--kubernetes-version 1.29 | tee addon-compatibility.txt

This matrix becomes your upgrade runbook’s dependency tree. No workload proceeds to the upgrade window until its row shows green. Teams own their remediation timelines, and the platform team owns the aggregate view. Schedule weekly reviews of the matrix as your upgrade date approaches, escalating any items that remain unresolved.

With your compatibility audit complete and all breaking changes addressed, you’re ready to execute the upgrade itself. The blue-green node group strategy provides the safest path forward, allowing you to validate the new Kubernetes version while maintaining instant rollback capability.

Blue-Green Node Group Strategy with Terraform

The blue-green deployment pattern, battle-tested in application deployments for decades, translates remarkably well to EKS node group upgrades. Instead of performing in-place upgrades that risk capacity constraints during pod rescheduling, you maintain two parallel node groups: the existing “blue” group running your current Kubernetes version, and a new “green” group running the target version. This approach eliminates the most common failure mode in cluster upgrades—running out of capacity while draining nodes.

Visual: Blue-green node group migration workflow

Terraform Module Pattern for Parallel Node Groups

The key to managing blue-green node groups effectively lies in your Terraform module structure. Rather than modifying existing node group configurations in place, you create a module that supports multiple node group generations simultaneously.

modules/eks-node-group/main.tf
variable "node_group_version" {
description = "Increment this to trigger blue-green deployment"
type = number
default = 1
}
variable "kubernetes_version" {
description = "Target Kubernetes version for the node group"
type = string
}
locals {
# Determine which generation is active
blue_version = var.node_group_version
green_version = var.node_group_version + 1
# Only create green group when upgrade is in progress
create_green = var.create_green_group
}
resource "aws_eks_node_group" "blue" {
cluster_name = var.cluster_name
node_group_name = "${var.node_group_name}-v${local.blue_version}"
node_role_arn = var.node_role_arn
subnet_ids = var.subnet_ids
version = var.current_kubernetes_version
scaling_config {
desired_size = var.create_green ? 0 : var.desired_size
max_size = var.max_size
min_size = var.create_green ? 0 : var.min_size
}
labels = {
"node-group-generation" = "blue"
"kubernetes-version" = var.current_kubernetes_version
}
taint {
key = var.create_green ? "decommissioning" : null
value = "true"
effect = "NO_SCHEDULE"
}
}
resource "aws_eks_node_group" "green" {
count = local.create_green ? 1 : 0
cluster_name = var.cluster_name
node_group_name = "${var.node_group_name}-v${local.green_version}"
node_role_arn = var.node_role_arn
subnet_ids = var.subnet_ids
version = var.kubernetes_version
scaling_config {
desired_size = var.desired_size
max_size = var.max_size
min_size = var.min_size
}
labels = {
"node-group-generation" = "green"
"kubernetes-version" = var.kubernetes_version
}
}

This pattern allows you to bring up the green node group at full capacity before touching the blue group, ensuring you never face resource constraints during migration.

Pod Disruption Budgets That Actually Work

Pod Disruption Budgets (PDBs) are your safety net during node drains, but poorly configured PDBs cause more upgrade failures than they prevent. The critical mistake is setting minAvailable too high or maxUnavailable too low for your replica count.

kubernetes/pdb.tf
resource "kubernetes_pod_disruption_budget_v1" "application" {
metadata {
name = "${var.app_name}-pdb"
namespace = var.namespace
}
spec {
max_unavailable = "25%"
selector {
match_labels = {
app = var.app_name
}
}
}
}

Pro Tip: Use percentage-based maxUnavailable values instead of absolute numbers. A maxUnavailable: 1 on a 3-replica deployment means only one pod can be disrupted at a time, potentially tripling your drain time. Setting maxUnavailable: 25% scales appropriately as your deployments grow.

Graceful Workload Migration with Taints

Once your green node group reaches full capacity and passes health checks, you initiate workload migration by tainting the blue nodes. This prevents new pods from scheduling on soon-to-be-decommissioned nodes while allowing existing workloads to continue running.

scripts/migrate-workloads.sh
#!/bin/bash
set -euo pipefail
BLUE_NODES=$(kubectl get nodes -l node-group-generation=blue -o name)
for node in $BLUE_NODES; do
echo "Tainting $node to prevent new scheduling..."
kubectl taint nodes "$node" decommissioning=true:NoSchedule --overwrite
done
## Verify green nodes are ready
GREEN_READY=$(kubectl get nodes -l node-group-generation=green \
--no-headers | grep -c "Ready")
if [[ $GREEN_READY -lt $REQUIRED_NODES ]]; then
echo "ERROR: Insufficient green nodes ready"
exit 1
fi
## Drain blue nodes with PDB respect
for node in $BLUE_NODES; do
echo "Draining $node..."
kubectl drain "$node" \
--ignore-daemonsets \
--delete-emptydir-data \
--grace-period=60 \
--timeout=300s
done

The drain command respects your PDBs automatically—if draining a node would violate a PDB, the operation pauses until pods are rescheduled elsewhere.

Validating the Migration

Before destroying the blue node group, verify all critical workloads are running on green nodes and all pods are healthy. A simple validation prevents premature cleanup:

scripts/validate-migration.sh
#!/bin/bash
BLUE_PODS=$(kubectl get pods --all-namespaces \
--field-selector spec.nodeName!=green -o name | wc -l)
if [[ $BLUE_PODS -gt 0 ]]; then
echo "WARNING: $BLUE_PODS pods still on blue nodes"
exit 1
fi

Once validation passes, set create_green = false and increment node_group_version to make green the new blue, completing the cycle.

With your node groups successfully migrated, the next challenge is upgrading EKS add-ons—particularly the networking components that keep your cluster connected.

Upgrading EKS Add-ons Without Breaking Networking

Add-on upgrades cause more EKS upgrade failures than any other component. A misconfigured VPC CNI leaves pods unable to communicate. A botched CoreDNS update creates DNS resolution gaps that cascade into application timeouts. These failures happen because teams treat add-ons as afterthoughts rather than critical infrastructure.

The order matters: upgrade the control plane first, then kube-proxy, followed by VPC CNI, and finally CoreDNS. This sequence respects the dependency chain and gives each component a stable foundation. Deviating from this order introduces race conditions where components attempt to use APIs or features not yet available.

VPC CNI: The Foundation of Pod Networking

The VPC CNI plugin assigns IP addresses to pods and manages network interfaces on your nodes. Upgrading it incorrectly breaks all pod-to-pod communication instantly and without warning.

Before upgrading, verify your current configuration and capture it for rollback:

vpc-cni-backup.yaml
apiVersion: v1
kind: ConfigMap
metadata:
name: amazon-vpc-cni
namespace: kube-system
data:
enable-prefix-delegation: "true"
warm-prefix-target: "1"
minimum-ip-target: "3"
warm-ip-target: "5"

Store this backup in version control alongside your cluster configuration. When upgrades fail, having the exact previous configuration eliminates guesswork during incident response.

Upgrade the VPC CNI using the EKS API rather than kubectl to ensure proper version compatibility:

upgrade-vpc-cni.sh
aws eks update-addon \
--cluster-name production-cluster \
--addon-name vpc-cni \
--addon-version v1.18.0-eksbuild.1 \
--resolve-conflicts PRESERVE \
--configuration-values '{"env":{"ENABLE_PREFIX_DELEGATION":"true"}}'

The PRESERVE flag keeps your custom configuration intact. Monitor the upgrade status and validate pod IP allocation on new pods before proceeding. Create a test pod in each availability zone and verify it receives an IP address within your expected CIDR range.

Pro Tip: Always test VPC CNI upgrades in a staging cluster with similar IP address utilization. Prefix delegation behavior changes between versions can exhaust your subnet faster than expected.

CoreDNS: Preventing Resolution Gaps

DNS resolution gaps manifest as intermittent connection failures that frustrate debugging efforts. Applications retry failed requests, masking the underlying issue until the problem compounds into visible outages. The solution is running multiple CoreDNS versions simultaneously during the transition.

Scale up CoreDNS replicas before the upgrade:

coredns-pre-upgrade.yaml
apiVersion: apps/v1
kind: Deployment
metadata:
name: coredns
namespace: kube-system
spec:
replicas: 4
strategy:
type: RollingUpdate
rollingUpdate:
maxUnavailable: 1
maxSurge: 1

Apply this configuration, wait for all replicas to become ready, then trigger the add-on upgrade. The rolling update ensures at least three replicas handle DNS queries throughout the process. After the upgrade completes successfully and you verify DNS resolution works correctly, scale the replicas back to your standard count to conserve resources.

kube-proxy: Timing Is Everything

kube-proxy must match or trail the control plane version by one minor version. Upgrade it immediately after the control plane upgrade completes but before touching nodes. Running a kube-proxy version ahead of the control plane causes unpredictable behavior as the proxy attempts to use features the API server does not support.

upgrade-kube-proxy.sh
aws eks update-addon \
--cluster-name production-cluster \
--addon-name kube-proxy \
--addon-version v1.30.0-eksbuild.3 \
--resolve-conflicts OVERWRITE

Use OVERWRITE here because kube-proxy rarely requires custom configuration, and version mismatches cause subtle iptables rule inconsistencies. These inconsistencies manifest as connection timeouts to specific services while others work normally, creating debugging scenarios that consume hours of engineering time.

Managing Helm and ArgoCD Add-ons

Custom add-ons installed via Helm or ArgoCD need version pinning aligned with your Kubernetes upgrade. Without explicit version constraints, automatic updates can pull incompatible versions mid-upgrade:

argocd-addon-application.yaml
apiVersion: argoproj.io/v1alpha1
kind: Application
metadata:
name: metrics-server
namespace: argocd
spec:
source:
repoURL: https://kubernetes-sigs.github.io/metrics-server
chart: metrics-server
targetRevision: 3.12.1
helm:
values: |
replicas: 2
podDisruptionBudget:
enabled: true
minAvailable: 1
syncPolicy:
automated:
prune: false
selfHeal: true

Disable automatic pruning during upgrades. This prevents ArgoCD from removing resources that temporarily drift during the upgrade window. Re-enable pruning only after confirming all components function correctly.

Create a dependency graph of your custom add-ons and upgrade them in topological order. Service meshes before observability stacks. Ingress controllers before applications that depend on them. Document these dependencies explicitly so future upgrades follow the same sequence.

With add-ons upgraded and networking stable, the next step is automating this entire process through GitOps pipelines that make upgrades repeatable and auditable.

Automated Upgrade Pipelines with ArgoCD and GitOps

Manual cluster upgrades work until you’re managing a fleet. With multiple production clusters across regions, the question shifts from “how do I upgrade?” to “how do I upgrade consistently and safely at scale?” GitOps with ArgoCD provides the answer: declarative, auditable, and automated upgrade orchestration that eliminates human error and ensures every cluster follows the same validated path.

Defining Cluster State as Code

The foundation of automated upgrades is treating cluster configuration as versioned artifacts. Create a Git repository structure that separates cluster definitions from application workloads:

clusters/production-us-east-1/cluster-config.yaml
apiVersion: eks.aws/v1alpha1
kind: ClusterConfig
metadata:
name: prod-us-east-1
spec:
kubernetesVersion: "1.29"
addons:
- name: vpc-cni
version: v1.16.0-eksbuild.1
- name: coredns
version: v1.11.1-eksbuild.6
- name: kube-proxy
version: v1.29.0-eksbuild.1
nodeGroups:
- name: general-1-29
instanceType: m6i.xlarge
desiredCapacity: 5
amiFamily: AL2023

When you commit a version bump to this file, the upgrade pipeline activates. No SSH sessions, no forgotten clusters, no configuration drift. Every change flows through pull requests, enabling code review for infrastructure changes and creating an immutable audit trail that satisfies compliance requirements.

Multi-Cluster Orchestration with ApplicationSets

ArgoCD ApplicationSets let you define upgrade patterns that propagate across your fleet with built-in ordering. Rather than managing dozens of individual Application resources, you define a single template that generates cluster-specific configurations:

argocd/cluster-upgrade-appset.yaml
apiVersion: argoproj.io/v1alpha1
kind: ApplicationSet
metadata:
name: eks-cluster-upgrades
namespace: argocd
spec:
generators:
- list:
elements:
- cluster: staging-us-east-1
wave: "1"
- cluster: prod-us-east-1
wave: "2"
- cluster: prod-us-west-2
wave: "2"
- cluster: prod-eu-west-1
wave: "3"
strategy:
type: RollingSync
rollingSync:
steps:
- matchExpressions:
- key: wave
operator: In
values: ["1"]
- matchExpressions:
- key: wave
operator: In
values: ["2"]
- matchExpressions:
- key: wave
operator: In
values: ["3"]
template:
metadata:
name: "cluster-config-{{cluster}}"
spec:
project: infrastructure
source:
repoURL: https://github.com/your-org/cluster-configs
targetRevision: main
path: "clusters/{{cluster}}"
destination:
server: "https://{{cluster}}.eks.amazonaws.com"
syncPolicy:
automated:
prune: false
selfHeal: true

Wave 1 upgrades staging. Only after staging succeeds does wave 2 begin with the first production clusters. Wave 3 handles remaining regions after the initial production clusters prove stable. This staged rollout catches issues before they reach your entire fleet, limiting blast radius when problems occur.

Prometheus-Driven Rollback Gates

Automated upgrades need automated safety nets. Configure ArgoCD to query Prometheus before advancing between waves, transforming observability data into actionable deployment decisions:

argocd/analysis-template.yaml
apiVersion: argoproj.io/v1alpha1
kind: AnalysisTemplate
metadata:
name: post-upgrade-validation
spec:
metrics:
- name: error-rate
interval: 60s
successCondition: result[0] < 0.01
failureLimit: 3
provider:
prometheus:
address: http://prometheus.monitoring:9090
query: |
sum(rate(http_requests_total{status=~"5.."}[5m]))
/
sum(rate(http_requests_total[5m]))
- name: pod-restart-rate
interval: 60s
successCondition: result[0] < 5
failureLimit: 2
provider:
prometheus:
address: http://prometheus.monitoring:9090
query: |
sum(increase(kube_pod_container_status_restarts_total[10m]))

If error rates spike above 1% or pods restart excessively after an upgrade, the pipeline halts automatically. The next wave never starts, and your on-call engineer gets paged with specific metrics rather than customer complaints. This approach shifts incident detection left, catching regressions during controlled rollouts rather than during peak traffic.

Pro Tip: Include a 15-minute bake time between waves. Some issues only surface under sustained load, not immediately after node replacement. Memory leaks, connection pool exhaustion, and gradual resource contention require time to manifest.

Staging Validation Gates

The staging cluster serves as your canary. Before production waves begin, run comprehensive validation that exercises critical application paths:

.github/workflows/staging-gate.yaml
- name: Validate Staging Upgrade
run: |
kubectl --context staging-us-east-1 wait --for=condition=Ready nodes --all --timeout=600s
kubectl --context staging-us-east-1 run smoke-test --image=curlimages/curl --rm -it --restart=Never -- \
curl -sf http://api-gateway.default/health
./scripts/run-integration-tests.sh --cluster staging-us-east-1

Only when staging passes all gates does ArgoCD receive the signal to proceed with production waves. Consider expanding these gates to include synthetic transaction testing, API contract validation, and performance baseline comparisons. The staging environment should mirror production traffic patterns as closely as possible to surface realistic failure modes.

With your upgrade pipeline automated and observable, you need confidence that each upgraded cluster actually works. Post-upgrade validation transforms hope into certainty.

Post-Upgrade Validation and Smoke Testing

A successful control plane upgrade means nothing if your workloads can’t communicate. The gap between “upgrade complete” and “production validated” is where incidents hide. Structured validation catches issues before your users do, transforming post-upgrade anxiety into systematic verification. Without a methodical approach, teams often discover problems hours or days later when customer-facing services degrade—a scenario that’s entirely preventable with proper smoke testing.

Critical Health Checks After Control Plane Upgrade

Start with the fundamentals. Your cluster components must report healthy status before proceeding with any workload validation. This initial verification establishes a baseline and surfaces obvious failures that would doom subsequent tests.

validate-cluster-health.sh
#!/bin/bash
set -euo pipefail
CLUSTER_NAME="${1:?Cluster name required}"
EXPECTED_VERSION="${2:?Expected Kubernetes version required}"
echo "=== EKS Control Plane Validation ==="
## Verify cluster version matches expected
ACTUAL_VERSION=$(aws eks describe-cluster --name "$CLUSTER_NAME" \
--query 'cluster.version' --output text)
if [[ "$ACTUAL_VERSION" != "$EXPECTED_VERSION" ]]; then
echo "ERROR: Version mismatch. Expected $EXPECTED_VERSION, got $ACTUAL_VERSION"
exit 1
fi
## Check all nodes are Ready and running correct kubelet version
echo "Checking node health..."
kubectl get nodes -o json | jq -r '
.items[] |
select(.status.conditions[] | select(.type=="Ready" and .status!="True")) |
"UNHEALTHY: \(.metadata.name)"'
## Verify critical system pods
echo "Checking system pods..."
kubectl get pods -n kube-system -o json | jq -r '
.items[] |
select(.status.phase != "Running" and .status.phase != "Succeeded") |
"NOT RUNNING: \(.metadata.name) - \(.status.phase)"'
## Validate API server responsiveness
echo "Testing API server latency..."
for i in {1..5}; do
kubectl get --raw /healthz >/dev/null
done
echo "API server responding normally"
## Verify etcd cluster health via API server
echo "Checking etcd connectivity..."
kubectl get --raw /healthz/etcd >/dev/null && echo "etcd: healthy"

Pay particular attention to node kubelet versions—nodes running older kubelet versions than the control plane can exhibit subtle behavioral differences that manifest as intermittent pod failures.

Validating CNI Functionality with Network Policy Tests

Network policies frequently break after upgrades, especially when VPC CNI versions drift from tested configurations. The CNI plugin runs as a DaemonSet on your nodes, and version mismatches between the control plane and CNI can cause IP allocation failures, dropped packets, or complete network isolation. Deploy a temporary validation workload to confirm pod-to-pod and pod-to-service communication across multiple availability zones.

network-validation.sh
#!/bin/bash
## Deploy network test pods
kubectl apply -f - <<EOF
apiVersion: v1
kind: Pod
metadata:
name: nettest-client
namespace: default
labels:
app: nettest
spec:
containers:
- name: curl
image: curlimages/curl:latest
command: ["sleep", "300"]
---
apiVersion: v1
kind: Pod
metadata:
name: nettest-server
namespace: default
spec:
containers:
- name: nginx
image: nginx:alpine
ports:
- containerPort: 80
EOF
kubectl wait --for=condition=Ready pod/nettest-client pod/nettest-server --timeout=60s
## Test pod-to-pod connectivity
SERVER_IP=$(kubectl get pod nettest-server -o jsonpath='{.status.podIP}')
kubectl exec nettest-client -- curl -sf "http://${SERVER_IP}" >/dev/null \
&& echo "Pod-to-pod: PASS" || echo "Pod-to-pod: FAIL"
## Test DNS resolution
kubectl exec nettest-client -- curl -sf "http://kubernetes.default.svc" >/dev/null \
&& echo "CoreDNS resolution: PASS" || echo "CoreDNS resolution: FAIL"
## Test cross-namespace communication
kubectl exec nettest-client -- curl -sf "http://metrics-server.kube-system.svc" >/dev/null \
&& echo "Cross-namespace DNS: PASS" || echo "Cross-namespace DNS: FAIL"
## Cleanup
kubectl delete pod nettest-client nettest-server --grace-period=0 --force

Service Mesh Compatibility Verification

If you’re running Istio or Linkerd, validate sidecar injection and mTLS after upgrades. Version skew between the mesh control plane and data plane proxies causes silent failures that are notoriously difficult to debug in production. The mesh data plane (Envoy proxies) must maintain compatibility with both the Kubernetes API version and the mesh control plane version.

mesh-validation.sh
## For Istio deployments
istioctl analyze --all-namespaces
istioctl proxy-status | grep -v "SYNCED" && echo "Proxy sync issues detected"
## Verify mTLS is functioning
istioctl authn tls-check $(kubectl get pods -n default -o jsonpath='{.items[0].metadata.name}') \
| grep -E "OK|STRICT"
## For Linkerd deployments
linkerd check --proxy
linkerd viz stat deploy --all-namespaces

After mesh validation, trigger a rolling restart of workloads in critical namespaces to ensure sidecars pick up any configuration changes pushed during the upgrade.

Pro Tip: Create a dedicated smoke-test namespace with representative workloads that exercise your most critical communication paths. Run these tests in CI before declaring the upgrade complete. Include at least one stateful workload with persistent volumes to validate CSI driver compatibility.

Common Post-Upgrade Issues

SymptomLikely CauseResolution
Pods stuck in ContainerCreatingCNI plugin version mismatchUpdate VPC CNI add-on to compatible version
Intermittent DNS failuresCoreDNS resource exhaustionScale CoreDNS deployment, increase memory limits
Service mesh 503 errorsEnvoy/proxy version incompatibilityRolling restart of injected pods
PVCs pending indefinitelyCSI driver API version mismatchUpdate EBS/EFS CSI driver add-on
Webhook timeoutsAdmission controller compatibilityRestart webhook deployments, verify certificates
Node NotReady after upgradeKubelet version skew exceededUpgrade node groups to match control plane

Document each issue encountered during validation in your runbook. These records become invaluable for future upgrades and help establish realistic time estimates for your maintenance windows.

With validation complete, your upgrade pipeline needs repeatability. Automated upgrade pipelines with ArgoCD eliminate manual intervention and encode your validation steps as GitOps workflows.

Key Takeaways

  • Always upgrade node groups using blue-green strategy: create new groups first, migrate workloads, then drain old groups
  • Run pluto and kubent against your manifests before every upgrade to catch API deprecations automatically
  • Upgrade EKS add-ons separately from the control plane, with VPC CNI requiring the most careful planning
  • Implement GitOps-driven upgrade pipelines that enforce staging validation before production changes